LOC_Os05g07050.1

Description : Pre-mRNA-processing-splicing factor

Gene families : OG_01_0014659 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014659_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g07050.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g07050.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_14
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_129

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005681	spliceosomal complex	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008237	metallopeptidase activity	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0017069	snRNA binding	None	Extended
MF	GO:0017070	U6 snRNA binding	ISM	GOs from InterProScan
MF	GO:0019783	ubiquitin-like protein peptidase activity	None	Extended
MF	GO:0030623	U5 snRNA binding	ISM	GOs from InterProScan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0070122	obsolete isopeptidase activity	ISM	GOs from InterProScan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0101005	deubiquitinase activity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140492	metal-dependent deubiquitinase activity	ISM	GOs from InterProScan
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR043173	Prp8_domainIV_fingers	Gene3D	1937	2035
IPR012337	RNaseH-like_sf	SUPERFAMILY	1011	1268
IPR019582	RRM_spliceosomal_PrP8	Pfam	1000	1090
IPR012337	RNaseH-like_sf	SUPERFAMILY	1778	2030
IPR042516	Prp8_U5-snRNA-bd_sf	Gene3D	1198	1318
IPR021983	PRP8_domainIV	CDD	1781	2031
IPR027652	PRP8	PANTHER	7	2350
IPR019581	Prp8_U5-snRNA-bd	Pfam	1225	1358
IPR000555	JAMM/MPN+_dom	Pfam	2116	2214
IPR012984	PROCT	Pfam	2227	2347
IPR012592	PROCN	Pfam	410	815
IPR012591	PRO8NT	Pfam	70	221
IPR037518	MPN	ProSiteProfiles	2118	2249
IPR000555	JAMM/MPN+_dom	SMART	2114	2248
IPR019580	Prp8_U6-snRNA-bd	Pfam	1457	1615
IPR021983	PRP8_domainIV	Pfam	1775	2004
IPR043172	Prp8_domainIV_palm	Gene3D	1776	1936

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os05g07050.1

Expression Profile

Co-expression Networks

Functional Annotation