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  5. Sevir.4G205900.1

Sevir.4G205900.1


Description : TBP-associated factor 5


Gene families : OG_01_0009074 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009074_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.4G205900.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.4G205900.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_161
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_75


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 477 563
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 564 652
IPR001680 WD40_rpt ProSiteProfiles 526 567
IPR001680 WD40_rpt ProSiteProfiles 442 483
IPR001680 WD40_rpt ProSiteProfiles 568 609
IPR007582 TFIID_NTD2 CDD 50 182
IPR019775 WD40_repeat_CS ProSitePatterns 545 559
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 324 650
IPR001680 WD40_rpt ProSiteProfiles 400 432
IPR019775 WD40_repeat_CS ProSitePatterns 587 601
IPR037264 TFIID_NTD2_sf SUPERFAMILY 44 181
IPR007582 TFIID_NTD2 Pfam 48 176
IPR001680 WD40_rpt ProSiteProfiles 331 365
IPR019775 WD40_repeat_CS ProSitePatterns 350 364
IPR020472 G-protein_beta_WD-40_rep PRINTS 419 433
IPR020472 G-protein_beta_WD-40_rep PRINTS 587 601
IPR020472 G-protein_beta_WD-40_rep PRINTS 503 517
IPR001680 WD40_rpt SMART 324 363
IPR001680 WD40_rpt SMART 477 516
IPR001680 WD40_rpt SMART 393 432
IPR001680 WD40_rpt SMART 561 600
IPR001680 WD40_rpt SMART 519 558
IPR001680 WD40_rpt SMART 435 474
IPR019775 WD40_repeat_CS ProSitePatterns 503 517
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 200 476
IPR001680 WD40_rpt Pfam 520 558
IPR001680 WD40_rpt Pfam 479 516
IPR001680 WD40_rpt Pfam 439 474
IPR001680 WD40_rpt Pfam 562 600
IPR001680 WD40_rpt Pfam 332 363
IPR001680 WD40_rpt Pfam 400 432
IPR037264 TFIID_NTD2_sf Gene3D 30 181
IPR001680 WD40_rpt ProSiteProfiles 484 525

No CAZYmes available for this sequence

No external refs found!