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  5. LOC_Os05g11990.1

LOC_Os05g11990.1


Description : tetratricopetide-repeat thioredoxin-like 1


Gene families : OG_01_0004048 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004048_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g11990.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g11990.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_390
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_8


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001440 TPR_1 Pfam 283 314
IPR011990 TPR-like_helical_dom_sf Gene3D 7 367
IPR019734 TPR_repeat ProSiteProfiles 281 314
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 19 351
IPR036249 Thioredoxin-like_sf SUPERFAMILY 284 479
IPR013766 Thioredoxin_domain Pfam 396 466
IPR044534 TTL1-4 PANTHER 3 480
IPR019734 TPR_repeat SMART 43 76
IPR019734 TPR_repeat SMART 9 42
IPR019734 TPR_repeat SMART 315 348
IPR019734 TPR_repeat SMART 247 280
IPR019734 TPR_repeat SMART 153 186
IPR019734 TPR_repeat SMART 281 314
IPR019734 TPR_repeat ProSiteProfiles 9 42

No CAZYmes available for this sequence

No external refs found!