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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0010849 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010849_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g12130.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g12130.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_245 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_118 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 117 | 151 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 220 | 253 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 552 | 584 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 517 | 550 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 115 | 149 |
| IPR032867 | DYW_dom | Pfam | 689 | 811 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 117 | 147 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 398 | 422 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 590 | 614 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 86 | 112 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 218 | 252 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 439 | 578 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 269 | 434 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 579 | 714 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 550 | 585 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 514 | 562 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 322 | 371 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 217 | 264 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 515 | 549 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 322 | 357 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 35 | 167 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 174 | 268 |
No CAZYmes available for this sequence
| No external refs found! |