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  5. LOC_Os05g13780.1

LOC_Os05g13780.1


Description : chromomethylase 2


Gene families : OG_01_0000383 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000383_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g13780.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g13780.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_178
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_34


Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding ISM GOs from InterProScan
MF GO:0008168 methyltransferase activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR016197 Chromo-like_dom_sf SUPERFAMILY 920 1001
IPR029063 SAM-dependent_MTases_sf SUPERFAMILY 829 1377
IPR018117 C5_DNA_meth_AS ProSitePatterns 1021 1033
IPR043151 BAH_sf Gene3D 618 776
IPR001025 BAH_dom SMART 673 791
IPR001525 C5_MeTfrase PRINTS 1064 1078
IPR001525 C5_MeTfrase PRINTS 831 847
IPR001525 C5_MeTfrase PRINTS 1110 1123
IPR023779 Chromodomain_CS ProSitePatterns 958 978
IPR031303 C5_meth_CS ProSitePatterns 1359 1377
IPR023780 Chromo_domain Pfam 950 988
IPR001025 BAH_dom Pfam 683 788
IPR001025 BAH_dom ProSiteProfiles 674 791
IPR000953 Chromo/chromo_shadow_dom ProSiteProfiles 935 988
IPR001525 C5_MeTfrase Pfam 1012 1376
IPR001525 C5_MeTfrase ProSiteProfiles 830 1384
IPR000953 Chromo/chromo_shadow_dom SMART 934 993

No CAZYmes available for this sequence

No external refs found!