LOC_Os05g16660.2

Description : Transducin/WD40 repeat-like superfamily protein

Gene families : OG_01_0001503 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001503_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g16660.2
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g16660.2
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_295
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_164

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003743	translation initiation factor activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	GOs from InterProScan
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	ISM	GOs from InterProScan
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR020472	G-protein_beta_WD-40_rep	PRINTS	161	175
IPR020472	G-protein_beta_WD-40_rep	PRINTS	67	81
IPR020472	G-protein_beta_WD-40_rep	PRINTS	206	220
IPR001680	WD40_rpt	ProSiteProfiles	6	47
IPR001680	WD40_rpt	SMART	41	80
IPR001680	WD40_rpt	SMART	135	174
IPR001680	WD40_rpt	SMART	177	219
IPR001680	WD40_rpt	SMART	1	38
IPR001680	WD40_rpt	SMART	222	262
IPR001680	WD40_rpt	SMART	277	316
IPR027525	eIF3i	Hamap	1	326
IPR001680	WD40_rpt	ProSiteProfiles	142	183
IPR001680	WD40_rpt	ProSiteProfiles	48	89
IPR019775	WD40_repeat_CS	ProSitePatterns	161	175
IPR001680	WD40_rpt	ProSiteProfiles	187	228
IPR001680	WD40_rpt	Pfam	188	219
IPR001680	WD40_rpt	Pfam	43	80
IPR001680	WD40_rpt	Pfam	283	314
IPR001680	WD40_rpt	Pfam	7	37
IPR001680	WD40_rpt	Pfam	149	174
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	1	326
IPR001680	WD40_rpt	ProSiteProfiles	284	314
IPR036322	WD40_repeat_dom_sf	SUPERFAMILY	4	314
IPR019775	WD40_repeat_CS	ProSitePatterns	67	81

No CAZYmes available for this sequence

External Links

No external refs found!