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  5. LOC_Os05g19380.1

LOC_Os05g19380.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0015164 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015164_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g19380.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g19380.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_73
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_140


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 670 704
IPR002885 Pentatricopeptide_rpt TIGRFAM 253 284
IPR002885 Pentatricopeptide_rpt TIGRFAM 743 768
IPR002885 Pentatricopeptide_rpt TIGRFAM 602 635
IPR002885 Pentatricopeptide_rpt TIGRFAM 287 321
IPR002885 Pentatricopeptide_rpt TIGRFAM 637 671
IPR002885 Pentatricopeptide_rpt TIGRFAM 707 739
IPR002885 Pentatricopeptide_rpt TIGRFAM 427 459
IPR002885 Pentatricopeptide_rpt TIGRFAM 216 250
IPR002885 Pentatricopeptide_rpt TIGRFAM 182 214
IPR002885 Pentatricopeptide_rpt TIGRFAM 322 356
IPR002885 Pentatricopeptide_rpt TIGRFAM 498 530
IPR002885 Pentatricopeptide_rpt TIGRFAM 393 425
IPR002885 Pentatricopeptide_rpt TIGRFAM 357 391
IPR002885 Pentatricopeptide_rpt TIGRFAM 672 704
IPR002885 Pentatricopeptide_rpt TIGRFAM 463 494
IPR002885 Pentatricopeptide_rpt Pfam 253 281
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 495 529
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 320 354
IPR011990 TPR-like_helical_dom_sf Gene3D 347 421
IPR011990 TPR-like_helical_dom_sf Gene3D 555 648
IPR011990 TPR-like_helical_dom_sf Gene3D 438 554
IPR011990 TPR-like_helical_dom_sf Gene3D 81 230
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 214 249
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 600 634
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 460 494
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 635 669
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 171 523
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 355 389
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 705 739
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 179 213
IPR002885 Pentatricopeptide_rpt Pfam 175 227
IPR002885 Pentatricopeptide_rpt Pfam 589 647
IPR011990 TPR-like_helical_dom_sf Gene3D 231 346
IPR011990 TPR-like_helical_dom_sf Gene3D 652 791
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 390 424
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 285 319
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 425 459
IPR002885 Pentatricopeptide_rpt Pfam 354 401
IPR002885 Pentatricopeptide_rpt Pfam 284 325
IPR002885 Pentatricopeptide_rpt Pfam 424 471
IPR002885 Pentatricopeptide_rpt Pfam 704 753
IPR002885 Pentatricopeptide_rpt Pfam 494 543
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 250 284
IPR002885 Pentatricopeptide_rpt Pfam 667 697

No CAZYmes available for this sequence

No external refs found!