LOC_Os05g19570.1

Description : expansin 11

Gene families : OG_01_0000144 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000144_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g19570.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g19570.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_312
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_172

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009664	plant-type cell wall organization	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002963	Expansin	PANTHER	11	255
IPR036908	RlpA-like_sf	Gene3D	18	157
IPR002963	Expansin	PRINTS	58	72
IPR002963	Expansin	PRINTS	119	136
IPR002963	Expansin	PRINTS	86	97
IPR002963	Expansin	PRINTS	136	149
IPR002963	Expansin	PRINTS	100	110
IPR002963	Expansin	PRINTS	160	172
IPR002963	Expansin	PRINTS	207	228
IPR002963	Expansin	PRINTS	172	193
IPR002963	Expansin	PRINTS	236	252
IPR007117	Expansin_CBD	Pfam	162	239
IPR009009	RlpA-like_DPBB	Pfam	64	151
IPR036908	RlpA-like_sf	SUPERFAMILY	15	179
IPR007118	Expan_Lol_pI	PRINTS	67	85
IPR007118	Expan_Lol_pI	PRINTS	236	250
IPR007118	Expan_Lol_pI	PRINTS	144	160
IPR007118	Expan_Lol_pI	PRINTS	198	212
IPR007118	Expan_Lol_pI	PRINTS	45	63
IPR007118	Expan_Lol_pI	PRINTS	27	42
IPR007117	Expansin_CBD	ProSiteProfiles	171	250
IPR036749	Expansin_CBD_sf	SUPERFAMILY	158	249
IPR007112	Expansin/allergen_DPBB_dom	ProSiteProfiles	46	161
IPR036749	Expansin_CBD_sf	Gene3D	161	255
IPR007112	Expansin/allergen_DPBB_dom	SMART	63	151

No CAZYmes available for this sequence

External Links

No external refs found!