LOC_Os05g22260.1

Description : crooked neck protein, putative / cell cycle protein, putative

Gene families : OG_01_0001676 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001676_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g22260.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g22260.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_318
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_201

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	ISM	GOs from InterProScan
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR045075	Syf1-like	PANTHER	10	721
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	210	276
IPR003107	HAT	SMART	155	187
IPR003107	HAT	SMART	292	326
IPR003107	HAT	SMART	519	553
IPR003107	HAT	SMART	87	119
IPR003107	HAT	SMART	485	517
IPR003107	HAT	SMART	370	404
IPR003107	HAT	SMART	414	450
IPR003107	HAT	SMART	452	483
IPR003107	HAT	SMART	222	253
IPR003107	HAT	SMART	255	290
IPR003107	HAT	SMART	189	220
IPR003107	HAT	SMART	121	153
IPR003107	HAT	SMART	555	586
IPR003107	HAT	SMART	336	368
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	285	539
IPR011990	TPR-like_helical_dom_sf	Gene3D	494	691
IPR011990	TPR-like_helical_dom_sf	Gene3D	345	481
IPR003107	HAT	Pfam	223	251
IPR003107	HAT	Pfam	124	151
IPR011990	TPR-like_helical_dom_sf	Gene3D	138	341
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	542	654
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	97	211

No CAZYmes available for this sequence

External Links

No external refs found!