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  5. LOC_Os05g32730.1

LOC_Os05g32730.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0015275 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015275_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g32730.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g32730.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_330
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_44


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 414 448
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 136 171
IPR002885 Pentatricopeptide_rpt TIGRFAM 351 382
IPR002885 Pentatricopeptide_rpt TIGRFAM 209 242
IPR002885 Pentatricopeptide_rpt TIGRFAM 451 484
IPR002885 Pentatricopeptide_rpt TIGRFAM 416 449
IPR002885 Pentatricopeptide_rpt TIGRFAM 385 406
IPR002885 Pentatricopeptide_rpt TIGRFAM 174 208
IPR002885 Pentatricopeptide_rpt TIGRFAM 279 313
IPR002885 Pentatricopeptide_rpt TIGRFAM 245 278
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 172 206
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 347 381
IPR002885 Pentatricopeptide_rpt Pfam 245 270
IPR011990 TPR-like_helical_dom_sf Gene3D 340 408
IPR011990 TPR-like_helical_dom_sf Gene3D 271 339
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 207 241
IPR011990 TPR-like_helical_dom_sf Gene3D 149 270
IPR002885 Pentatricopeptide_rpt Pfam 347 395
IPR002885 Pentatricopeptide_rpt Pfam 171 220
IPR002885 Pentatricopeptide_rpt Pfam 414 462
IPR002885 Pentatricopeptide_rpt Pfam 276 325
IPR011990 TPR-like_helical_dom_sf Gene3D 56 148
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 242 276
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 277 311
IPR011990 TPR-like_helical_dom_sf Gene3D 409 552

No CAZYmes available for this sequence

No external refs found!