LOC_Os05g33610.1

Description : homolog of yeast autophagy 18 (ATG18) H

Gene families : OG_01_0005464 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005464_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g33610.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g33610.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_383
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_196

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006914	autophagy	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0061919	process utilizing autophagic mechanism	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001680	WD40_rpt	SMART	426	466
IPR001680	WD40_rpt	SMART	365	405
IPR022175	BCAS3_dom	Pfam	512	753
IPR045142	BCAS3-like	PANTHER	6	1005
IPR036322	WD40_repeat_dom_sf	SUPERFAMILY	74	469
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	57	547

No CAZYmes available for this sequence

External Links

No external refs found!