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  5. LOC_Os05g33920.1

LOC_Os05g33920.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0015724 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015724_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g33920.1 No neighbors in network
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g33920.1
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_229


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 212 246
IPR011990 TPR-like_helical_dom_sf Gene3D 11 178
IPR011990 TPR-like_helical_dom_sf Gene3D 185 392
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 247 281
IPR002885 Pentatricopeptide_rpt TIGRFAM 113 146
IPR002885 Pentatricopeptide_rpt TIGRFAM 214 247
IPR002885 Pentatricopeptide_rpt TIGRFAM 250 281
IPR002885 Pentatricopeptide_rpt TIGRFAM 14 45
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 10 44
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 111 145
IPR002885 Pentatricopeptide_rpt Pfam 113 140
IPR002885 Pentatricopeptide_rpt Pfam 14 42
IPR002885 Pentatricopeptide_rpt Pfam 285 309
IPR002885 Pentatricopeptide_rpt Pfam 211 259
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 88 369

No CAZYmes available for this sequence

No external refs found!