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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0014668 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014668_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g34570.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g34570.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_104 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_66 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | Pfam | 267 | 313 |
| IPR032867 | DYW_dom | Pfam | 442 | 533 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 303 | 336 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 200 | 232 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 140 | 165 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 268 | 301 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 168 | 196 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 36 | 127 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 249 | 448 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 151 | 422 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 135 | 165 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 140 | 165 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 39 | 64 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 200 | 229 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 168 | 197 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 135 | 248 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 266 | 300 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 166 | 200 |
No CAZYmes available for this sequence
| No external refs found! |