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  5. LOC_Os05g40320.1

LOC_Os05g40320.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0016212 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016212_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g40320.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g40320.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_299
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_180


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 163 356
IPR002885 Pentatricopeptide_rpt Pfam 234 254
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 232 266
IPR002885 Pentatricopeptide_rpt TIGRFAM 305 332
IPR002885 Pentatricopeptide_rpt TIGRFAM 269 302
IPR002885 Pentatricopeptide_rpt TIGRFAM 234 268
IPR011990 TPR-like_helical_dom_sf Gene3D 54 196
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 267 301
IPR002885 Pentatricopeptide_rpt Pfam 266 311
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 302 336
IPR011990 TPR-like_helical_dom_sf Gene3D 199 378

No CAZYmes available for this sequence

No external refs found!