LOC_Os05g40740.3

Description : SKU5 similar 13

Gene families : OG_01_0002715 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002715_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g40740.3
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_66

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005507	copper ion binding	ISM	GOs from InterProScan
MF	GO:0016491	oxidoreductase activity	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001117	Cu-oxidase_2nd	Pfam	164	304
IPR011707	Cu-oxidase-like_N	Pfam	38	150
IPR008972	Cupredoxin	SUPERFAMILY	28	177
IPR008972	Cupredoxin	SUPERFAMILY	351	543
IPR045087	Cu-oxidase_fam	PANTHER	10	547
IPR008972	Cupredoxin	Gene3D	32	151
IPR011706	Cu-oxidase_C	Pfam	385	523
IPR008972	Cupredoxin	Gene3D	350	545
IPR008972	Cupredoxin	Gene3D	162	340
IPR008972	Cupredoxin	SUPERFAMILY	160	341

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
AA1	358	557	2.8e-65	49	507

External Links

No external refs found!