LOC_Os05g41080.1

Description : Histone superfamily protein

Gene families : OG_01_0007511 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007511_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g41080.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g41080.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_100
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_19

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
MF	GO:0046982	protein heterodimerization activity	ISM	GOs from InterProScan
MF	GO:0046983	protein dimerization activity	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR009072	Histone-fold	Gene3D	2	164
IPR000164	Histone_H3/CENP-A	SMART	61	164
IPR007125	Histone_H2A/H2B/H3	Pfam	38	159
IPR000164	Histone_H3/CENP-A	PANTHER	1	163
IPR000164	Histone_H3/CENP-A	PRINTS	142	163
IPR000164	Histone_H3/CENP-A	PRINTS	108	126
IPR000164	Histone_H3/CENP-A	PRINTS	126	142
IPR000164	Histone_H3/CENP-A	PRINTS	39	53
IPR009072	Histone-fold	SUPERFAMILY	40	161
IPR000164	Histone_H3/CENP-A	ProSitePatterns	94	102

No CAZYmes available for this sequence

External Links

No external refs found!