LOC_Os05g41510.1

Description : global transcription factor group B1

Gene families : OG_01_0001900 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001900_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g41510.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g41510.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_267
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_67

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	ISM	GOs from InterProScan
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032784	regulation of DNA-templated transcription elongation	None	Extended
BP	GO:0032786	positive regulation of DNA-templated transcription, elongation	None	Extended
BP	GO:0032968	positive regulation of transcription elongation by RNA polymerase II	ISM	GOs from InterProScan
BP	GO:0034243	regulation of transcription elongation by RNA polymerase II	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR017072	TF_Spt6	PANTHER	91	1632
IPR036860	SH2_dom_sf	Gene3D	1354	1445
IPR041692	HHH_9	Pfam	1021	1103
IPR012340	NA-bd_OB-fold	SUPERFAMILY	1132	1210
IPR035018	Spt6_SH2_C	CDD	1354	1441
IPR010994	RuvA_2-like	SUPERFAMILY	919	1007
IPR028083	Spt6_acidic_N_dom	Pfam	38	130
IPR032706	Spt6_HHH	Pfam	907	1006
IPR036860	SH2_dom_sf	Gene3D	1242	1352
IPR042066	Spt6_death-like	Gene3D	1015	1110
IPR003029	S1_domain	ProSiteProfiles	1137	1206
IPR035019	Spt6_SH2_N	CDD	1256	1344
IPR006641	YqgF/RNaseH-like_dom	SMART	748	866
IPR010994	RuvA_2-like	SUPERFAMILY	1020	1112
IPR037027	YqgF/RNaseH-like_dom_sf	Gene3D	733	1128
IPR035420	Spt6_SH2	Pfam	1223	1440
IPR028231	Spt6_YqgF	Pfam	749	903
IPR012337	RNaseH-like_sf	SUPERFAMILY	748	903
IPR036860	SH2_dom_sf	SUPERFAMILY	1391	1442
IPR023319	Tex-like_HTH_dom_sf	Gene3D	301	486
IPR023323	Tex-like_dom_sf	Gene3D	487	941
IPR017072	TF_Spt6	PIRSF	3	1496
IPR036860	SH2_dom_sf	SUPERFAMILY	1259	1345

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os05g41510.1

Expression Profile

Co-expression Networks

Functional Annotation