LOC_Os05g43390.1

Description : Signal recognition particle, SRP54 subunit protein

Gene families : OG_01_0001122 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001122_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g43390.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g43390.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_314
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_6

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	None	Extended
BP	GO:0006613	cotranslational protein targeting to membrane	None	Extended
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	ISM	GOs from InterProScan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008312	7S RNA binding	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0045047	protein targeting to ER	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
CC	GO:0048500	signal recognition particle	ISM	GOs from InterProScan
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051668	localization within membrane	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0070972	protein localization to endoplasmic reticulum	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR042101	SRP54_N_sf	Gene3D	5	306
IPR036891	Signal_recog_part_SRP54_M_sf	SUPERFAMILY	298	432
IPR000897	SRP54_GTPase_dom	SMART	101	296
IPR013822	Signal_recog_particl_SRP54_hlx	Pfam	6	83
IPR036225	SRP/SRP_N	SUPERFAMILY	1	94
IPR003593	AAA+_ATPase	SMART	100	277
IPR013822	Signal_recog_particl_SRP54_hlx	SMART	2	87
IPR027417	P-loop_NTPase	SUPERFAMILY	95	298
IPR027417	P-loop_NTPase	Gene3D	91	285
IPR000897	SRP54_GTPase_dom	Pfam	101	296
IPR004125	Signal_recog_particle_SRP54_M	Pfam	327	428
IPR022941	SRP54	Hamap	6	480
IPR036891	Signal_recog_part_SRP54_M_sf	Gene3D	310	445
IPR022941	SRP54	PANTHER	1	480
IPR000897	SRP54_GTPase_dom	ProSitePatterns	269	282
IPR006325	SRP54_euk	TIGRFAM	2	427

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os05g43390.1

Expression Profile

Co-expression Networks

Functional Annotation