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LOC_Os05g44600.1


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0008000 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008000_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g44600.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g44600.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_307
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_4


Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity ISM GOs from InterProScan
BP GO:0042545 cell wall modification ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR033131 Pectinesterase_Asp_AS ProSitePatterns 255 264
IPR012334 Pectin_lyas_fold Gene3D 96 398
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 94 397
IPR000070 Pectinesterase_cat Pfam 107 392
HMM Family HMM Length Query Length e-Value Query Start Query End
CE8 288 399 5.6e-99 101 392
No external refs found!