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  5. LOC_Os05g46270.1

LOC_Os05g46270.1


Description : 5\'-3\' exonuclease family protein


Gene families : OG_01_0010018 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010018_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g46270.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g46270.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_261
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_141


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISM GOs from InterProScan
MF GO:0003824 catalytic activity ISM GOs from InterProScan
MF GO:0004518 nuclease activity ISM GOs from InterProScan
MF GO:0016788 hydrolase activity, acting on ester bonds ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR006086 XPG-I_dom Pfam 150 234
IPR019974 XPG_CS ProSitePatterns 80 94
IPR019974 XPG_CS ProSitePatterns 150 164
IPR006084 XPG/Rad2 PANTHER 1 338
IPR008918 HhH2 SMART 221 254
IPR006084 XPG/Rad2 PRINTS 224 239
IPR006084 XPG/Rad2 PRINTS 146 163
IPR006084 XPG/Rad2 PRINTS 82 101
IPR006084 XPG/Rad2 PRINTS 167 187
IPR006084 XPG/Rad2 PRINTS 28 42
IPR006086 XPG-I_dom SMART 147 219
IPR036279 5-3_exonuclease_C_sf SUPERFAMILY 219 338
IPR002421 5-3_exonuclease SMART 29 299
IPR006085 XPG_DNA_repair_N SMART 1 108
IPR023426 Flap_endonuc Hamap 1 339
IPR006085 XPG_DNA_repair_N Pfam 1 107
IPR029060 PIN-like_dom_sf SUPERFAMILY 2 234

No CAZYmes available for this sequence

No external refs found!