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  5. LOC_Os05g46740.1

LOC_Os05g46740.1


Description : Regulator of chromosome condensation (RCC1) family protein


Gene families : OG_01_0006809 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006809_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g46740.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_42


Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000408 Reg_chr_condens ProSiteProfiles 327 381
IPR000408 Reg_chr_condens Pfam 549 596
IPR000408 Reg_chr_condens Pfam 495 544
IPR000408 Reg_chr_condens Pfam 326 376
IPR000408 Reg_chr_condens Pfam 446 492
IPR000408 Reg_chr_condens Pfam 275 323
IPR000408 Reg_chr_condens Pfam 381 430
IPR001849 PH_domain ProSiteProfiles 1 114
IPR013591 Brevis_radix_dom ProSiteProfiles 974 1029
IPR000408 Reg_chr_condens ProSiteProfiles 444 495
IPR000408 Reg_chr_condens ProSiteProfiles 275 326
IPR017455 Znf_FYVE-rel ProSiteProfiles 604 666
IPR000408 Reg_chr_condens ProSiteProfiles 548 599
IPR009091 RCC1/BLIP-II SUPERFAMILY 215 601
IPR000408 Reg_chr_condens ProSitePatterns 420 430
IPR011011 Znf_FYVE_PHD SUPERFAMILY 600 667
IPR000306 Znf_FYVE SMART 598 667
IPR013591 Brevis_radix_dom Pfam 975 1028
IPR000306 Znf_FYVE Pfam 600 666
IPR027988 BRX_N Pfam 852 887
IPR011993 PH-like_dom_sf Gene3D 2 118
IPR000408 Reg_chr_condens ProSiteProfiles 496 547
IPR000408 Reg_chr_condens PRINTS 277 293
IPR000408 Reg_chr_condens PRINTS 543 564
IPR000408 Reg_chr_condens PRINTS 368 384
IPR000408 Reg_chr_condens PRINTS 384 398
IPR000408 Reg_chr_condens PRINTS 327 343
IPR000408 Reg_chr_condens PRINTS 485 503
IPR000408 Reg_chr_condens ProSiteProfiles 382 433
IPR009091 RCC1/BLIP-II Gene3D 337 514
IPR009091 RCC1/BLIP-II Gene3D 155 336
IPR009091 RCC1/BLIP-II Gene3D 515 612
IPR013083 Znf_RING/FYVE/PHD Gene3D 613 671

No CAZYmes available for this sequence

No external refs found!