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  5. LOC_Os05g48960.4

LOC_Os05g48960.4


Description : Zinc finger C-x8-C-x5-C-x3-H type family protein


Gene families : OG_01_0005446 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005446_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g48960.4
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g48960.4
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_342
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_214


Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome ISM GOs from InterProScan
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0046872 metal ion binding ISM GOs from InterProScan
CC GO:0089701 U2AF complex ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR009145 U2AF_small PRINTS 103 125
IPR009145 U2AF_small PRINTS 37 57
IPR009145 U2AF_small PRINTS 165 177
IPR009145 U2AF_small PRINTS 75 90
IPR009145 U2AF_small PRINTS 18 37
IPR009145 U2AF_small PRINTS 130 154
IPR000571 Znf_CCCH ProSiteProfiles 12 40
IPR000504 RRM_dom Pfam 83 139
IPR009145 U2AF_small PANTHER 1 303
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 43 145
IPR000571 Znf_CCCH ProSiteProfiles 148 175
IPR035979 RBD_domain_sf SUPERFAMILY 77 149
IPR000504 RRM_dom ProSiteProfiles 44 146
IPR000571 Znf_CCCH SMART 148 174
IPR000571 Znf_CCCH SMART 13 39
IPR000571 Znf_CCCH Pfam 150 173
IPR000571 Znf_CCCH Pfam 14 38

No CAZYmes available for this sequence

No external refs found!