1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os05g50180.1

LOC_Os05g50180.1


Description : EF hand calcium-binding protein family


Gene families : OG_01_0019634 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0019634_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g50180.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g50180.1 No neighbors in network
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_226


Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002048 EF_hand_dom CDD 101 163
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 110 122
IPR002048 EF_hand_dom ProSiteProfiles 57 92
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 34 46
IPR002048 EF_hand_dom SMART 25 53
IPR002048 EF_hand_dom SMART 137 165
IPR002048 EF_hand_dom SMART 61 89
IPR002048 EF_hand_dom SMART 101 129
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 146 158
IPR002048 EF_hand_dom ProSiteProfiles 133 168
IPR011992 EF-hand-dom_pair SUPERFAMILY 14 163
IPR002048 EF_hand_dom ProSiteProfiles 21 56
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 70 82
IPR002048 EF_hand_dom ProSiteProfiles 97 132
IPR002048 EF_hand_dom Pfam 100 162
IPR002048 EF_hand_dom Pfam 24 85

No CAZYmes available for this sequence

No external refs found!