LOC_Os05g50260.1

Description : Pectin lyase-like superfamily protein

Gene families : OG_01_0004882 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004882_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g50260.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g50260.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_71
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_100

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	ISM	GOs from InterProScan
BP	GO:0005975	carbohydrate metabolic process	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011050	Pectin_lyase_fold/virulence	SUPERFAMILY	3	270
IPR000743	Glyco_hydro_28	Pfam	3	222
IPR006626	PbH1	SMART	146	167
IPR006626	PbH1	SMART	14	63
IPR006626	PbH1	SMART	117	138
IPR006626	PbH1	SMART	64	85
IPR006626	PbH1	SMART	87	107
IPR012334	Pectin_lyas_fold	Gene3D	2	226

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
GH28	325	272	1.5e-70	5	222

External Links

No external refs found!