LOC_Os06g01400.1

Description : glycine-tRNA ligases

Gene families : OG_01_0004072 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004072_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os06g01400.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os06g01400.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_147
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_159

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	None	Extended
MF	GO:0004820	glycine-tRNA ligase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	GOs from InterProScan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	None	Extended
BP	GO:0006426	glycyl-tRNA aminoacylation	ISM	GOs from InterProScan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR045864	aa-tRNA-synth_II/BPL/LPL	Gene3D	60	275
IPR002310	Gly-tRNA_ligase_asu	PRINTS	147	167
IPR002310	Gly-tRNA_ligase_asu	PRINTS	227	242
IPR002310	Gly-tRNA_ligase_asu	PRINTS	126	141
IPR002310	Gly-tRNA_ligase_asu	PRINTS	178	202
IPR002310	Gly-tRNA_ligase_asu	PRINTS	312	328
IPR002310	Gly-tRNA_ligase_asu	PRINTS	204	224
IPR015944	Gly-tRNA-synth_bsu	TIGRFAM	385	1065
IPR015944	Gly-tRNA-synth_bsu	PANTHER	382	1068
IPR006194	Gly-tRNA-synth_heterodimer	ProSiteProfiles	73	347
IPR015944	Gly-tRNA-synth_bsu	Pfam	386	930
IPR015944	Gly-tRNA-synth_bsu	Hamap	383	1065
IPR045864	aa-tRNA-synth_II/BPL/LPL	SUPERFAMILY	73	352
IPR002310	Gly-tRNA_ligase_asu	Pfam	74	351
IPR002310	Gly-tRNA_ligase_asu	TIGRFAM	73	357
IPR002310	Gly-tRNA_ligase_asu	Hamap	72	352
IPR002310	Gly-tRNA_ligase_asu	CDD	73	351
IPR006194	Gly-tRNA-synth_heterodimer	ProSiteProfiles	741	1030

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os06g01400.1

Expression Profile

Co-expression Networks

Functional Annotation