LOC_Os06g04070.1

Description : arginine decarboxylase 2

Gene families : OG_01_0009397 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009397_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os06g04070.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os06g04070.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_345
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_207

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	ISM	GOs from InterProScan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006525	arginine metabolic process	None	Extended
BP	GO:0006527	arginine catabolic process	ISM	GOs from InterProScan
BP	GO:0006576	biogenic amine metabolic process	None	Extended
BP	GO:0006595	polyamine metabolic process	None	Extended
BP	GO:0006596	polyamine biosynthetic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008216	spermidine metabolic process	None	Extended
BP	GO:0008295	spermidine biosynthetic process	ISM	GOs from InterProScan
MF	GO:0008792	arginine decarboxylase activity	ISM	GOs from InterProScan
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009063	amino acid catabolic process	None	Extended
BP	GO:0009064	glutamine family amino acid metabolic process	None	Extended
BP	GO:0009065	glutamine family amino acid catabolic process	None	Extended
BP	GO:0009308	amine metabolic process	None	Extended
BP	GO:0009309	amine biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016054	organic acid catabolic process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
MF	GO:0016831	carboxy-lyase activity	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042401	biogenic amine biosynthetic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0046395	carboxylic acid catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901606	alpha-amino acid catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR029066	PLP-binding_barrel	SUPERFAMILY	116	399
IPR009006	Ala_racemase/Decarboxylase_C	Gene3D	55	600
IPR002985	Arg_decrbxlase	PRINTS	249	271
IPR002985	Arg_decrbxlase	PRINTS	377	394
IPR002985	Arg_decrbxlase	PRINTS	525	550
IPR002985	Arg_decrbxlase	PRINTS	225	246
IPR002985	Arg_decrbxlase	PRINTS	577	598
IPR002985	Arg_decrbxlase	PRINTS	199	214
IPR002985	Arg_decrbxlase	PRINTS	116	131
IPR002985	Arg_decrbxlase	PRINTS	140	154
IPR002985	Arg_decrbxlase	PRINTS	500	521
IPR002985	Arg_decrbxlase	CDD	114	598
IPR029066	PLP-binding_barrel	Gene3D	117	399
IPR002985	Arg_decrbxlase	PIRSF	31	669
IPR022653	De-COase2_pyr-phos_BS	ProSitePatterns	148	166
IPR002985	Arg_decrbxlase	PANTHER	22	641
IPR002985	Arg_decrbxlase	TIGRFAM	46	643
IPR022644	De-COase2_N	Pfam	139	397
IPR009006	Ala_racemase/Decarboxylase_C	SUPERFAMILY	494	601
IPR000183	Orn/DAP/Arg_de-COase	PRINTS	172	184
IPR000183	Orn/DAP/Arg_de-COase	PRINTS	577	590
IPR000183	Orn/DAP/Arg_de-COase	PRINTS	148	166
IPR000183	Orn/DAP/Arg_de-COase	PRINTS	387	406
IPR000183	Orn/DAP/Arg_de-COase	PRINTS	292	305

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os06g04070.1

Expression Profile

Co-expression Networks

Functional Annotation