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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0003088 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003088_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os06g05140.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os06g05140.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_115 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_113 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | Pfam | 362 | 390 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 199 | 227 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 332 | 358 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 425 | 452 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 230 | 259 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 396 | 420 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 660 | 683 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 170 | 197 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 486 | 515 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 559 | 584 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 125 | 286 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 452 | 544 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 393 | 451 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 5 | 124 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 288 | 392 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 64 | 113 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 453 | 479 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 585 | 631 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 166 | 200 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 65 | 99 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 360 | 394 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 599 | 733 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 484 | 518 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 422 | 456 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 329 | 359 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 67 | 100 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 455 | 479 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 332 | 357 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 587 | 620 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 230 | 262 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 425 | 452 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 199 | 226 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 362 | 392 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 486 | 519 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 228 | 262 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 585 | 619 |
No CAZYmes available for this sequence
| No external refs found! |