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  5. LOC_Os06g05260.1

LOC_Os06g05260.1


Description : Pectate lyase family protein


Gene families : OG_01_0005765 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005765_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os06g05260.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_61


Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002022 Pec_lyase SMART 175 371
IPR018082 AmbAllergen PRINTS 147 172
IPR018082 AmbAllergen PRINTS 348 367
IPR018082 AmbAllergen PRINTS 123 140
IPR018082 AmbAllergen PRINTS 246 267
IPR018082 AmbAllergen PRINTS 183 199
IPR018082 AmbAllergen PRINTS 419 442
IPR018082 AmbAllergen PRINTS 326 345
IPR018082 AmbAllergen PRINTS 390 414
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 101 438
IPR007524 Pec_lyase_N Pfam 34 87
IPR012334 Pectin_lyas_fold Gene3D 100 441
IPR045032 PEL PANTHER 12 448
IPR002022 Pec_lyase Pfam 184 365

No CAZYmes available for this sequence

No external refs found!