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  5. LOC_Os06g05272.1

LOC_Os06g05272.1


Description : Pectate lyase family protein


Gene families : OG_01_0005765 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005765_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os06g05272.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os06g05272.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_6
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_494


Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002022 Pec_lyase SMART 78 271
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 4 339
IPR002022 Pec_lyase Pfam 84 265
IPR012334 Pectin_lyas_fold Gene3D 3 341
IPR045032 PEL PANTHER 1 348
IPR018082 AmbAllergen PRINTS 226 245
IPR018082 AmbAllergen PRINTS 149 170
IPR018082 AmbAllergen PRINTS 50 75
IPR018082 AmbAllergen PRINTS 26 43
IPR018082 AmbAllergen PRINTS 248 267
IPR018082 AmbAllergen PRINTS 319 342
IPR018082 AmbAllergen PRINTS 86 102
IPR018082 AmbAllergen PRINTS 290 314

No CAZYmes available for this sequence

No external refs found!