LOC_Os06g07878.1

Description : 20S proteasome alpha subunit C1

Gene families : OG_01_0011926 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011926_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os06g07878.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os06g07878.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_160
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_206

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005839	proteasome core complex	ISM	GOs from InterProScan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	ISM	GOs from InterProScan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0019773	proteasome core complex, alpha-subunit complex	ISM	GOs from InterProScan
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	ISM	GOs from InterProScan
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR029055	Ntn_hydrolases_N	SUPERFAMILY	4	216
IPR001353	Proteasome_sua/b	Pfam	30	214
IPR029055	Ntn_hydrolases_N	Gene3D	1	248
IPR000426	Proteasome_asu_N	Pfam	5	27
IPR000426	Proteasome_asu_N	ProSitePatterns	5	27
IPR000426	Proteasome_asu_N	SMART	5	27
IPR023332	Proteasome_alpha-type	ProSiteProfiles	20	238

No CAZYmes available for this sequence

External Links

No external refs found!