LOC_Os06g08650.1

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG_01_0012973 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012973_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os06g08650.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os06g08650.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_166
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_204

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002885	Pentatricopeptide_rpt	TIGRFAM	565	595
IPR002885	Pentatricopeptide_rpt	TIGRFAM	492	526
IPR002885	Pentatricopeptide_rpt	TIGRFAM	160	188
IPR002885	Pentatricopeptide_rpt	TIGRFAM	189	222
IPR002885	Pentatricopeptide_rpt	TIGRFAM	391	425
IPR002885	Pentatricopeptide_rpt	TIGRFAM	527	561
IPR011990	TPR-like_helical_dom_sf	Gene3D	120	238
IPR011990	TPR-like_helical_dom_sf	Gene3D	464	672
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	389	423
IPR045215	PPR_prot_At1g15510	PANTHER	42	672
IPR011990	TPR-like_helical_dom_sf	Gene3D	239	341
IPR011990	TPR-like_helical_dom_sf	Gene3D	352	441
IPR002885	Pentatricopeptide_rpt	Pfam	263	284
IPR002885	Pentatricopeptide_rpt	Pfam	565	588
IPR002885	Pentatricopeptide_rpt	Pfam	290	312
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	187	221
IPR002885	Pentatricopeptide_rpt	Pfam	186	234
IPR002885	Pentatricopeptide_rpt	Pfam	388	429
IPR002885	Pentatricopeptide_rpt	Pfam	490	537
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	156	186
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	490	524

No CAZYmes available for this sequence

External Links

No external refs found!