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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0019371 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0019371_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os06g08660.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os06g08660.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_262 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_87 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 237 | 325 |
| IPR032867 | DYW_dom | Pfam | 653 | 777 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 277 | 311 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 254 | 639 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 448 | 478 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 378 | 412 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 554 | 577 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 279 | 308 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 251 | 275 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 452 | 481 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 481 | 514 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 381 | 413 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 104 | 236 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 327 | 431 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 478 | 525 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 381 | 425 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 479 | 513 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 432 | 544 |
No CAZYmes available for this sequence
| No external refs found! |