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  5. LOC_Os06g21390.1

LOC_Os06g21390.1


Description : zinc finger (CCCH-type/C3HC4-type RING finger) family protein


Gene families : OG_01_0004156 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004156_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os06g21390.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os06g21390.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_379
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_210


Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001841 Znf_RING SMART 216 273
IPR000571 Znf_CCCH Pfam 151 172
IPR001841 Znf_RING ProSiteProfiles 216 274
IPR000571 Znf_CCCH ProSiteProfiles 30 57
IPR000571 Znf_CCCH ProSiteProfiles 147 174
IPR000571 Znf_CCCH ProSiteProfiles 2 29
IPR013083 Znf_RING/FYVE/PHD Gene3D 190 307
IPR000571 Znf_CCCH ProSiteProfiles 303 332
IPR041367 Znf-CCCH_4 Pfam 35 54
IPR017907 Znf_RING_CS ProSitePatterns 240 249
IPR000571 Znf_CCCH SMART 303 331
IPR000571 Znf_CCCH SMART 148 173
IPR000571 Znf_CCCH SMART 2 28
IPR000571 Znf_CCCH SMART 31 56
IPR045072 MKRN-like PANTHER 4 359
IPR018957 Znf_C3HC4_RING-type Pfam 216 273
IPR036855 Znf_CCCH_sf SUPERFAMILY 3 27
IPR036855 Znf_CCCH_sf SUPERFAMILY 31 54

No CAZYmes available for this sequence

No external refs found!