LOC_Os06g27790.1

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG_01_0012259 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012259_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os06g27790.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os06g27790.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_160
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_138

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	179	245
IPR002885	Pentatricopeptide_rpt	Pfam	74	121
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	44	74
IPR011990	TPR-like_helical_dom_sf	Gene3D	10	120
IPR011990	TPR-like_helical_dom_sf	Gene3D	121	207
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	75	109
IPR032867	DYW_dom	Pfam	248	372
IPR002885	Pentatricopeptide_rpt	Pfam	150	173
IPR002885	Pentatricopeptide_rpt	TIGRFAM	77	110
IPR002885	Pentatricopeptide_rpt	TIGRFAM	47	75
IPR002885	Pentatricopeptide_rpt	TIGRFAM	150	173

No CAZYmes available for this sequence

External Links

No external refs found!