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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0014763 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014763_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os06g29800.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os06g29800.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_115 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_143 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 36 | 70 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 475 | 522 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 373 | 420 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 392 | 520 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 186 | 332 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 449 | 476 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 550 | 574 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 376 | 407 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 477 | 510 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 512 | 543 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 16 | 166 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 475 | 509 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 521 | 626 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 374 | 408 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 549 | 573 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 69 | 98 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 278 | 301 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 40 | 68 |
No CAZYmes available for this sequence
| No external refs found! |