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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0008221 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008221_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.4G250500.2 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.4G250500.2 | No neighbors in network |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_118 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 341 | 375 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 551 | 585 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 403 | 473 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 474 | 546 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 621 | 655 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 236 | 270 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 306 | 340 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 480 | 529 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 271 | 319 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 550 | 597 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 188 | 284 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 516 | 550 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 376 | 410 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 411 | 445 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 586 | 620 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 567 | 698 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 286 | 402 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 481 | 515 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 446 | 480 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 336 | 369 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 231 | 264 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 200 | 229 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 372 | 404 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 441 | 473 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 308 | 342 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 483 | 517 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 449 | 481 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 273 | 304 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 588 | 621 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 343 | 377 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 203 | 237 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 238 | 271 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 378 | 411 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 554 | 586 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 415 | 447 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 518 | 552 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 623 | 656 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 271 | 305 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 609 | 667 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 201 | 235 |
No CAZYmes available for this sequence
| No external refs found! |