LOC_Os06g38470.1

Description : histone deacetylase 1

Gene families : OG_01_0002534 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002534_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os06g38470.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os06g38470.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_347
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_229

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004407	histone deacetylase activity	ISM	GOs from InterProScan
BP	GO:0006476	protein deacetylation	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016575	histone deacetylation	ISM	GOs from InterProScan
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	None	Extended
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	None	Extended
MF	GO:0019213	deacetylase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0033558	protein lysine deacetylase activity	None	Extended
BP	GO:0035601	protein deacylation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043687	post-translational protein modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0098732	macromolecule deacylation	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140993	histone modifying activity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR023801	His_deacetylse_dom	Pfam	41	328
IPR037138	His_deacetylse_dom_sf	Gene3D	20	392
IPR003084	His_deacetylse_1	PIRSF	10	471
IPR000286	His_deacetylse	PRINTS	266	276
IPR000286	His_deacetylse	PRINTS	149	172
IPR000286	His_deacetylse	PRINTS	181	196
IPR003084	His_deacetylse_1	PRINTS	43	60
IPR003084	His_deacetylse_1	PRINTS	107	124
IPR003084	His_deacetylse_1	PRINTS	244	262
IPR003084	His_deacetylse_1	PRINTS	76	94
IPR003084	His_deacetylse_1	PRINTS	128	148
IPR003084	His_deacetylse_1	PRINTS	168	184
IPR003084	His_deacetylse_1	PRINTS	227	240
IPR023696	Ureohydrolase_dom_sf	SUPERFAMILY	22	385

No CAZYmes available for this sequence

External Links

No external refs found!