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Description : poly(A)-binding protein 5
Gene families : OG_01_0007205 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007205_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os06g38980.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os06g38980.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_32 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_136 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | ISM | GOs from InterProScan |
| MF | GO:0003723 | RNA binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 337 | 426 |
| IPR045305 | RRM2_I_PABPs | CDD | 147 | 222 |
| IPR000504 | RRM_dom | ProSiteProfiles | 240 | 317 |
| IPR000504 | RRM_dom | Pfam | 62 | 133 |
| IPR000504 | RRM_dom | Pfam | 242 | 310 |
| IPR000504 | RRM_dom | Pfam | 151 | 219 |
| IPR000504 | RRM_dom | Pfam | 345 | 413 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 235 | 322 |
| IPR000504 | RRM_dom | SMART | 61 | 135 |
| IPR000504 | RRM_dom | SMART | 241 | 313 |
| IPR000504 | RRM_dom | SMART | 150 | 222 |
| IPR000504 | RRM_dom | SMART | 344 | 416 |
| IPR002004 | PABP_HYD | Pfam | 575 | 639 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 323 | 428 |
| IPR002004 | PABP_HYD | ProSiteProfiles | 567 | 644 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 52 | 141 |
| IPR000504 | RRM_dom | ProSiteProfiles | 60 | 139 |
| IPR006515 | PABP_1234 | TIGRFAM | 60 | 639 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 37 | 149 |
| IPR000504 | RRM_dom | ProSiteProfiles | 343 | 420 |
| IPR000504 | RRM_dom | ProSiteProfiles | 149 | 226 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 150 | 234 |
| IPR003954 | RRM_dom_euk | SMART | 61 | 135 |
| IPR003954 | RRM_dom_euk | SMART | 241 | 313 |
| IPR003954 | RRM_dom_euk | SMART | 150 | 222 |
| IPR003954 | RRM_dom_euk | SMART | 344 | 416 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 150 | 321 |
| IPR036053 | PABP-dom | SUPERFAMILY | 478 | 640 |
| IPR002004 | PABP_HYD | SMART | 579 | 642 |
No CAZYmes available for this sequence
| No external refs found! |