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  5. Sevir.4G255400.1

Sevir.4G255400.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0015883 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015883_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.4G255400.1 No neighbors in network
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.4G255400.1
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_42


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 68 103
IPR002885 Pentatricopeptide_rpt TIGRFAM 174 208
IPR002885 Pentatricopeptide_rpt TIGRFAM 276 310
IPR011990 TPR-like_helical_dom_sf Gene3D 229 316
IPR011990 TPR-like_helical_dom_sf Gene3D 5 120
IPR002885 Pentatricopeptide_rpt Pfam 311 338
IPR002885 Pentatricopeptide_rpt Pfam 248 270
IPR002885 Pentatricopeptide_rpt Pfam 41 65
IPR002885 Pentatricopeptide_rpt Pfam 72 89
IPR002885 Pentatricopeptide_rpt Pfam 348 372
IPR002885 Pentatricopeptide_rpt Pfam 276 306
IPR002885 Pentatricopeptide_rpt Pfam 173 219
IPR011990 TPR-like_helical_dom_sf Gene3D 125 226
IPR011990 TPR-like_helical_dom_sf Gene3D 317 424
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 274 308
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 172 206

No CAZYmes available for this sequence

No external refs found!