LOC_Os06g43690.1

Description : transducin family protein / WD-40 repeat family protein

Gene families : OG_01_0003777 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003777_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os06g43690.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os06g43690.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_60
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_165

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	ISM	GOs from InterProScan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
CC	GO:0030684	preribosome	None	Extended
CC	GO:0032040	small-subunit processome	ISM	GOs from InterProScan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001680	WD40_rpt	ProSiteProfiles	471	512
IPR007319	SSU_processome_Utp21	Pfam	687	898
IPR001680	WD40_rpt	Pfam	550	586
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	3	630
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	13	314
IPR001680	WD40_rpt	SMART	506	544
IPR001680	WD40_rpt	SMART	83	120
IPR001680	WD40_rpt	SMART	464	503
IPR001680	WD40_rpt	SMART	304	343
IPR001680	WD40_rpt	SMART	547	586
IPR001680	WD40_rpt	SMART	171	210
IPR001680	WD40_rpt	SMART	257	297
IPR001680	WD40_rpt	SMART	213	254
IPR001680	WD40_rpt	SMART	589	628
IPR011047	Quinoprotein_ADH-like_supfam	SUPERFAMILY	137	627
IPR019775	WD40_repeat_CS	ProSitePatterns	573	587
IPR024977	Apc4-like_WD40_dom	Pfam	191	277
IPR001680	WD40_rpt	ProSiteProfiles	554	595
IPR001680	WD40_rpt	ProSiteProfiles	265	296

No CAZYmes available for this sequence

External Links

No external refs found!