LOC_Os06g46400.1

Description : cleavage and polyadenylation specificity factor 30

Gene families : OG_01_0007285 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007285_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os06g46400.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os06g46400.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_350
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_32

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	ISM	GOs from InterProScan
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR007275	YTH_domain	Pfam	260	322
IPR007275	YTH_domain	Pfam	338	394
IPR000571	Znf_CCCH	ProSiteProfiles	112	139
IPR000571	Znf_CCCH	ProSiteProfiles	58	85
IPR000571	Znf_CCCH	ProSiteProfiles	86	111
IPR000571	Znf_CCCH	SMART	114	138
IPR000571	Znf_CCCH	SMART	86	112
IPR000571	Znf_CCCH	SMART	58	84
IPR045168	YTH_prot	PANTHER	1	664
IPR007275	YTH_domain	ProSiteProfiles	260	395
IPR036855	Znf_CCCH_sf	SUPERFAMILY	59	83

No CAZYmes available for this sequence

External Links

No external refs found!