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  5. LOC_Os06g46880.1

LOC_Os06g46880.1


Description : SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein


Gene families : OG_01_0015327 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015327_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os06g46880.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os06g46880.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_250
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_112


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISM GOs from InterProScan
BP GO:0006396 RNA processing ISM GOs from InterProScan
BP GO:0006874 intracellular calcium ion homeostasis ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR039037 CHERP PANTHER 112 635
IPR008942 ENTH_VHS Gene3D 243 378
IPR006569 CID_dom ProSiteProfiles 238 379
IPR000061 Surp ProSiteProfiles 123 167
IPR006569 CID_dom Pfam 246 371
IPR000061 Surp Pfam 124 169
IPR000061 Surp SMART 121 173
IPR035967 SWAP/Surp_sf SUPERFAMILY 95 169
IPR006569 CID_dom SMART 245 376
IPR035967 SWAP/Surp_sf Gene3D 110 172

No CAZYmes available for this sequence

No external refs found!