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  5. LOC_Os06g47640.1

LOC_Os06g47640.1


Description : EF hand calcium-binding protein family


Gene families : OG_01_0014996 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014996_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os06g47640.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os06g47640.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_63
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_178


Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 40 52
IPR002048 EF_hand_dom ProSiteProfiles 63 98
IPR002048 EF_hand_dom ProSiteProfiles 27 62
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 76 88
IPR011992 EF-hand-dom_pair SUPERFAMILY 29 168
IPR002048 EF_hand_dom CDD 32 92
IPR002048 EF_hand_dom Pfam 32 92
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 151 163
IPR002048 EF_hand_dom ProSiteProfiles 138 170
IPR002048 EF_hand_dom SMART 67 95
IPR002048 EF_hand_dom SMART 31 59
IPR002048 EF_hand_dom SMART 142 170
IPR002048 EF_hand_dom Pfam 119 164

No CAZYmes available for this sequence

No external refs found!