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  5. LOC_Os06g47950.1

LOC_Os06g47950.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0016402 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016402_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os06g47950.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os06g47950.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_310
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_66


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 302 336
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 231 261
IPR002885 Pentatricopeptide_rpt Pfam 167 188
IPR002885 Pentatricopeptide_rpt Pfam 413 438
IPR002885 Pentatricopeptide_rpt Pfam 230 277
IPR011990 TPR-like_helical_dom_sf Gene3D 329 483
IPR002885 Pentatricopeptide_rpt TIGRFAM 413 442
IPR002885 Pentatricopeptide_rpt TIGRFAM 306 337
IPR002885 Pentatricopeptide_rpt TIGRFAM 339 371
IPR002885 Pentatricopeptide_rpt TIGRFAM 233 267
IPR011990 TPR-like_helical_dom_sf Gene3D 218 328
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 337 371
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 407 441
IPR002885 Pentatricopeptide_rpt Pfam 325 383
IPR011990 TPR-like_helical_dom_sf Gene3D 63 217

No CAZYmes available for this sequence

No external refs found!