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  5. LOC_Os07g01130.1

LOC_Os07g01130.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0011891 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011891_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os07g01130.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os07g01130.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_11
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_110


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 139 250
IPR011990 TPR-like_helical_dom_sf Gene3D 251 351
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 429 463
IPR002885 Pentatricopeptide_rpt Pfam 463 512
IPR002885 Pentatricopeptide_rpt Pfam 253 302
IPR002885 Pentatricopeptide_rpt Pfam 87 131
IPR002885 Pentatricopeptide_rpt Pfam 572 617
IPR002885 Pentatricopeptide_rpt Pfam 358 407
IPR011990 TPR-like_helical_dom_sf Gene3D 352 421
IPR011990 TPR-like_helical_dom_sf Gene3D 422 490
IPR011990 TPR-like_helical_dom_sf Gene3D 6 113
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 359 393
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 464 498
IPR002885 Pentatricopeptide_rpt Pfam 57 76
IPR002885 Pentatricopeptide_rpt Pfam 152 178
IPR002885 Pentatricopeptide_rpt Pfam 424 456
IPR002885 Pentatricopeptide_rpt Pfam 319 350
IPR002885 Pentatricopeptide_rpt Pfam 530 560
IPR002885 Pentatricopeptide_rpt Pfam 215 248
IPR011990 TPR-like_helical_dom_sf Gene3D 491 584
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 569 603
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 394 428
IPR025610 MYC/MYB_N Pfam 764 921
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 289 323
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 220 250
IPR011990 TPR-like_helical_dom_sf Gene3D 585 728
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 324 358
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 185 219
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 499 533
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 534 568
IPR002885 Pentatricopeptide_rpt TIGRFAM 87 119
IPR002885 Pentatricopeptide_rpt TIGRFAM 326 360
IPR002885 Pentatricopeptide_rpt TIGRFAM 397 430
IPR002885 Pentatricopeptide_rpt TIGRFAM 466 499
IPR002885 Pentatricopeptide_rpt TIGRFAM 361 395
IPR002885 Pentatricopeptide_rpt TIGRFAM 501 535
IPR002885 Pentatricopeptide_rpt TIGRFAM 291 324
IPR002885 Pentatricopeptide_rpt TIGRFAM 572 604
IPR002885 Pentatricopeptide_rpt TIGRFAM 431 465
IPR002885 Pentatricopeptide_rpt TIGRFAM 152 185
IPR002885 Pentatricopeptide_rpt TIGRFAM 222 249
IPR002885 Pentatricopeptide_rpt TIGRFAM 536 568
IPR002885 Pentatricopeptide_rpt TIGRFAM 256 289
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 254 288
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 604 638
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 84 118
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 150 184

No CAZYmes available for this sequence

No external refs found!