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  5. LOC_Os07g07000.1

LOC_Os07g07000.1


Description : syntaxin of plants 132


Gene families : OG_01_0001180 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001180_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os07g07000.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os07g07000.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_283
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_4


Type GO Term Name Evidence Source
MF GO:0005484 SNAP receptor activity ISM GOs from InterProScan
BP GO:0006886 intracellular protein transport ISM GOs from InterProScan
CC GO:0016020 membrane ISM GOs from InterProScan
BP GO:0016192 vesicle-mediated transport ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000727 T_SNARE_dom SMART 199 266
IPR000727 T_SNARE_dom Pfam 241 292
IPR006011 Syntaxin_N Pfam 37 239
IPR006011 Syntaxin_N CDD 34 191
IPR000727 T_SNARE_dom ProSiteProfiles 204 266
IPR006011 Syntaxin_N SMART 29 155
IPR006012 Syntaxin/epimorphin_CS ProSitePatterns 210 249
IPR010989 SNARE SUPERFAMILY 34 259
IPR045242 Syntaxin PANTHER 4 296

No CAZYmes available for this sequence

No external refs found!