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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0010048 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010048_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os07g07620.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os07g07620.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_245 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_9 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | Pfam | 320 | 349 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 81 | 107 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 465 | 492 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 539 | 564 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 186 | 266 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 216 | 250 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 318 | 352 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 565 | 599 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 219 | 250 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 320 | 350 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 81 | 108 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 190 | 218 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 567 | 600 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 565 | 611 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 216 | 261 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 185 | 215 |
| IPR032867 | DYW_dom | Pfam | 744 | 863 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 78 | 108 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 109 | 144 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 491 | 754 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 267 | 429 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 52 | 178 |
No CAZYmes available for this sequence
| No external refs found! |