- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Pentatricopeptide repeat (PPR-like) superfamily protein
Gene families : OG_01_0007505 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007505_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os07g08180.2 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os07g08180.2 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_160 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_9 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 404 | 438 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 544 | 578 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 331 | 362 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 334 | 368 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 264 | 298 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 293 | 398 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 140 | 292 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 369 | 403 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 229 | 263 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 650 | 684 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 302 | 329 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 407 | 429 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 653 | 682 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 373 | 400 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 582 | 605 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 266 | 300 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 653 | 682 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 232 | 263 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 407 | 439 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 546 | 579 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 511 | 545 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 337 | 369 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 372 | 404 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 302 | 335 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 610 | 707 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 479 | 608 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 399 | 478 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 228 | 277 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 509 | 555 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 299 | 333 |
No CAZYmes available for this sequence
| No external refs found! |