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  5. LOC_Os07g11280.2

LOC_Os07g11280.2


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0004348 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004348_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os07g11280.2
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os07g11280.2
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_41
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_208


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 46 214
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 151 459
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 80 114
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 467 501
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 397 431
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 432 466
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 362 396
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 607 641
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 187 221
IPR002885 Pentatricopeptide_rpt Pfam 150 199
IPR002885 Pentatricopeptide_rpt Pfam 82 126
IPR002885 Pentatricopeptide_rpt Pfam 435 478
IPR002885 Pentatricopeptide_rpt Pfam 362 407
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 257 291
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 150 184
IPR011990 TPR-like_helical_dom_sf Gene3D 238 337
IPR011990 TPR-like_helical_dom_sf Gene3D 338 445
IPR011990 TPR-like_helical_dom_sf Gene3D 127 237
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 10 44
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 222 256
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 292 326
IPR002885 Pentatricopeptide_rpt TIGRFAM 83 115
IPR002885 Pentatricopeptide_rpt TIGRFAM 152 185
IPR002885 Pentatricopeptide_rpt TIGRFAM 48 80
IPR002885 Pentatricopeptide_rpt TIGRFAM 435 468
IPR002885 Pentatricopeptide_rpt TIGRFAM 224 258
IPR002885 Pentatricopeptide_rpt TIGRFAM 364 398
IPR002885 Pentatricopeptide_rpt TIGRFAM 399 430
IPR002885 Pentatricopeptide_rpt TIGRFAM 470 503
IPR002885 Pentatricopeptide_rpt TIGRFAM 294 328
IPR002885 Pentatricopeptide_rpt TIGRFAM 13 46
IPR002885 Pentatricopeptide_rpt TIGRFAM 259 292
IPR002885 Pentatricopeptide_rpt TIGRFAM 189 223
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 45 79
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 502 536
IPR002885 Pentatricopeptide_rpt Pfam 48 74
IPR002885 Pentatricopeptide_rpt Pfam 13 42
IPR002885 Pentatricopeptide_rpt Pfam 575 601
IPR011990 TPR-like_helical_dom_sf Gene3D 1 110
IPR011990 TPR-like_helical_dom_sf Gene3D 571 676
IPR011990 TPR-like_helical_dom_sf Gene3D 446 570
IPR002885 Pentatricopeptide_rpt Pfam 490 546
IPR002885 Pentatricopeptide_rpt Pfam 245 304
IPR002885 Pentatricopeptide_rpt Pfam 315 359

No CAZYmes available for this sequence

No external refs found!