1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os07g12140.1

LOC_Os07g12140.1


Description : PENTATRICOPEPTIDE REPEAT 596


Gene families : OG_01_0010571 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010571_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os07g12140.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os07g12140.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_295
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_29


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 313 347
IPR002885 Pentatricopeptide_rpt Pfam 246 273
IPR002885 Pentatricopeptide_rpt Pfam 455 483
IPR002885 Pentatricopeptide_rpt Pfam 489 510
IPR011990 TPR-like_helical_dom_sf Gene3D 417 606
IPR011990 TPR-like_helical_dom_sf Gene3D 294 401
IPR011990 TPR-like_helical_dom_sf Gene3D 150 293
IPR002885 Pentatricopeptide_rpt TIGRFAM 455 483
IPR002885 Pentatricopeptide_rpt TIGRFAM 246 274
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 451 485
IPR002885 Pentatricopeptide_rpt Pfam 526 571
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 523 557

No CAZYmes available for this sequence

No external refs found!